R2: redesign session store with wire-format identity

Replace the single-session SessionManager seam with a directory-backed
catalog. session_manager.zig -> file_system_jsonl_store.zig; the old
machinery becomes internal SessionFile, and a new FileSystemJSONLStore
implements the redesigned SessionStore vtable (create/list/resolve/latest/
load/appendMessages) minting Session/SessionInfo handles.

Session logs now record wire-format provider identity
({api_style, base_url, model, reasoning}) instead of a single provider
string or CLI aliases; no api_key material is ever stored. Disk* content
types renamed Stored*; the rich audit-oriented write record is
PersistentMessage (in-memory Message + WireIdentity + provenance).

Agent.init now takes a Session; persist_provider/persist_model display
strings deleted (banner stays alias-based, resume picks default model).
Message.metadata round-trips. Dangling-prompt recovery dropped. CLI
migrated to the catalog store for run/resume/list. Clean break, no version
bump (old logs wiped).

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