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Conversation.addUserMessage now takes a []ContentBlock (symmetric with
addAssistantMessage). Introduce a thin addUserText wrapper in agent.zig
for the plain-text case and update every call site in agent.zig and
anthropic_messages_json.zig accordingly.
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Replace all references to the "system" layer with "base" to better reflect
its role as the foundational extension/tool layer in panto's hierarchy.
The layer hierarchy now consistently uses: project > user > base.
Includes:
- Update agent README and build.zig documentation
- Refactor tool registry and config module to support layered lookups
- Add TestHarness abstraction for cleaner test setup
- Improve JSON serialization with wire-encoded tool names
- Add glob pattern matching for tool/extension discovery
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- bundle luarocks source in the panto binary
- bootstrap process (intended for first `panto` run):
- make ~/.local/share/panto/...
- write out luarocks sources into it
- run luarocks to install luv
- new `panto bootstrap` command just runs the bootstrap
- `panto bootstrap --force` removes everything and re-bootstraps
- new `panto lua` command just runs panto's embedded lua
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